PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vang02g03820.1
Common NameLR48_Vigan10g083500
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family ERF
Protein Properties Length: 220aa    MW: 25008.9 Da    PI: 6.1688
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vang02g03820.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2561e-1752102155
             AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                     + y+GVr++  + +Wv+e+r+p   +k+ r++lg+f t+e+Aa+a++ a+ +l+g
  Vang02g03820.1  52 PVYRGVRRRN-SDKWVCEVREP---NKKSRIWLGTFPTPEMAARAHDVAAMALRG 102
                     68*****888.8******9998...347*************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008471.7E-1352102IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.106.9E-3153112IPR001471AP2/ERF domain
SuperFamilySSF541712.75E-2153112IPR016177DNA-binding domain
SMARTSM003803.0E-2753116IPR001471AP2/ERF domain
PROSITE profilePS5103221.6853110IPR001471AP2/ERF domain
CDDcd000181.92E-2854112No hitNo description
PRINTSPR003679.1E-85465IPR001471AP2/ERF domain
PRINTSPR003679.1E-87692IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 220 aa     Download sequence    Send to blast
MFGLYHVSSQ LSPSFDSSSP PSVEFSDEEV LLAVRHPKKR AGRKKFRETR HPVYRGVRRR  60
NSDKWVCEVR EPNKKSRIWL GTFPTPEMAA RAHDVAAMAL RGRYACLNFA DSRWRLPAPA  120
SASAKDIQKA AAEAAEAFRP DQSSQNSNTR QECLEEVTKT TEQGVFYMEE DHEEQVLDIP  180
EQLRNMVLMS PSHCLGYEYE DADLDAHQDT EVSLWSFSI*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00557DAPTransfer from AT5G51990Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150440.0AP015044.1 Vigna angularis var. angularis DNA, chromosome 11, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014503472.11e-139PREDICTED: dehydration-responsive element-binding protein 1D-like
SwissprotQ9FJ931e-65DRE1D_ARATH; Dehydration-responsive element-binding protein 1D
TrEMBLA0A0L9VIZ91e-164A0A0L9VIZ9_PHAAN; Uncharacterized protein
TrEMBLA0A0S3TB851e-164A0A0S3TB85_PHAAN; Uncharacterized protein
STRINGGLYMA09G27180.21e-119(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF24333224
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G51990.12e-48C-repeat-binding factor 4
Publications ? help Back to Top
  1. Yang K, et al.
    Genome sequencing of adzuki bean (Vigna angularis) provides insight into high starch and low fat accumulation and domestication.
    Proc. Natl. Acad. Sci. U.S.A., 2015. 112(43): p. 13213-8
    [PMID:26460024]